Analysis of expressed sequence tags from Gibberella zeae (anamorph Fusarium graminearum).
Trail F, Xu JR, San Miguel P, Halgren RG, Kistler HC.
Fungal Genetics and Biology 2003 Mar;38(2):187-97.  [more]

In silico identification of components of the Toll-like receptor (TLR) signaling pathway in clustered chicken expressed sequence tags (ESTs).
Lynn DJ, Lloyd AT, O'Farrelly C.
Veterinary Immunology and Immunopathology. 2003 Jun 20;93(3-4):177-84.  [more]

Assessment of the Parallelisation approach of d2-cluster for High-Performance Sequence Clustering.
Carpenter JE, Christoffels A, Weinbach Y, Hide WA.
Journal of Computational Chemistry. 2002 23(7):755-757.  [more]

Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat.
Kantety RV, La Rota M, Matthews DE, Sorrells ME.
Plant Mol Biol. 2002 Mar-Apr;48(5-6):501-10.    [more - pdf]

In Silico Analysis On Frequency And Distribution Of Microsatellites In ESTs Of Some Cereal Species.
Varshney RK, Thiel T, Stein N, Langridge P, Graner A.
Cell Mol Biol Lett 2002;7(2A):537-46    [more - pdf]

Profiling the malaria genome: a gene survey of three species of malaria parasite with comparison to other apicomplexan species.
Carlton JM, Muller R, Yowell CA, Fluegge MR, Sturrock KA, Pritt JR, Vargas-Serrato E, Galinski MR, Barnwell JW, Mulder N, Kanapin A, Cawley SE, Hide WA, Dame JB.
Mol Biochem Parasitol 2001 118(2):201-210    [more]

B-EST: A BARLEY EST-DATABASE
Michalek W, Willscher U, Graner A, Pleissner K
Plant & Animal Genome IX Conference; San Diego, CA, January 13-17, 2001.  [more]

STACK: Sequence Tag Alignment and Consensus Knowledgebase.
Christoffels A, van Gelder A, Greyling G, Miller R, Hide T, Hide W.
Nucleic Acids Research 2001 Vol.29(1):234-238  [more]

Data Processing of Barley ESTs.
Pleissner K-P, Michalek W, Willscher U, Graner A.
Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany Intelligent Systems in Molecular Biology; UC San Diego, August 19-23, 2000.

StackPACK clustering tools used to identify novel candidate genes associated with Plasmodium virulence.
Miller R, Hide W.
South African National Bioinformatics Institute
Intelligent Systems in Molecular Biology; UC San Diego, August 19-23, 2000.

d2_cluster: A Validated Method for Clustering EST and Full-Length cDNA Sequences
Burke J, Davison D, Hide W.
Genome Research 1999 Vol.11:1135-1142  [more]

A Comprehensive Approach to Clustering of Expressed Human Gene Sequence: The Sequence Tag Alignment and Consensus Knowledge Base
Miller RT, Christoffels AG, Gopalakrishnan C, Burke J, Ptitsyn AA, Broveak TR, Hide WA
Genome Research 1999 Vol.9(11):1143-1155  [more]

Mutations in a novel retina-specific gene cause autosomal dominant retinitis pigmentosa
Sullivan LS, Heckenlively JR, Bowne SJ, Zuo J, Hide WA, Gal A, Denton M, Inglehearn CF, Blanton SH, Daiger SP
Nature Genetics 1999 Vol.22:255-259  [more]

Comparison of gene indexing databases.
Bouck J, Yu W, Gibbs R, Worley K.
Trends In Genetics 1999 Vol.15(4):159-162  [more]

Alternative Gene Form Discovery and Candidate Gene Selection from Gene Indexing Projects
Burke J, Wang H, Hide W, Davison DB.
Genome Research 1998 Vol.8(3):276-290  [more]

Assessment of Utility of ESTs for Nucleotide Diversity Using Available Assembled Alignments from dbEST, STACK2.0 and STACK-INDEX
Brian Karlak, Winston Hide
Genome Informatics 1998 pg 266-268  [more]

A novel approach towards a comprehensive consensus representation of the expressed human genome.
Hide W, Burke J, Christoffels A, Miller R.
Genome Informatics 1997 pg 187-196

Biological evaluation of d2, an algorithm for high-performance sequence comparison
Hide W, Burke J, Davison DB
Journal of Computational Biology 1994 Vol.1(3):199-215  [more]